Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05444000_108129 | Not Available | Positive | 1851132 - 1851374 | 8706.96 |
| multidrug resistance efflux pump | SAMN05444000_108130 | Not Available | Positive | 1851376 - 1852503 | 40446.9 |
| cob(ii)yrinic acid a,c-diamide reductase | SAMN05444000_108132 | Not Available | Positive | 1852796 - 1853608 | 30385.0 |
| nitrilase | SAMN05444000_108133 | Not Available | Negative | 1854031 - 1854966 | 34588.3 |
| ubie/coq5 methyltransferase family protein | SAMN05444000_108134 | Not Available | Negative | 1854978 - 1855829 | 30258.9 |
| dna-binding winged helix-turn-helix (whth) domain-containing protein | SAMN05444000_108135 | Not Available | Positive | 1855958 - 1857562 | 58879.3 |
| fad/fmn-containing dehydrogenase | SAMN05444000_108136 | Not Available | Negative | 1857589 - 1859004 | 50185.6 |
| protein of unknown function | SAMN05444000_108137 | Not Available | Negative | 1859132 - 1859389 | 9862.61 |
| sam domain (sterile alpha motif) | SAMN05444000_108138 | Not Available | Negative | 1859420 - 1863028 | 132045.0 |
| transposase and inactivated derivatives, is30 family | SAMN05444000_108139 | Not Available | Negative | 1863465 - 1864625 | 45135.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
