Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oligoendopeptidase f | SAMN05444000_10899 | Not Available | Negative | 1818827 - 1820647 | 68671.2 |
| lysophospholipase | SAMN05444000_108100 | Not Available | Negative | 1820756 - 1821706 | 35267.1 |
| scp-2 sterol transfer family protein | SAMN05444000_108101 | Not Available | Negative | 1821706 - 1821996 | 9750.42 |
| tetratricopeptide repeat-containing protein | SAMN05444000_108102 | Not Available | Positive | 1822063 - 1822629 | 20057.8 |
| atp-dependent rna helicase supv3l1/suv3 | SAMN05444000_108103 | Not Available | Positive | 1822646 - 1825462 | 103671.0 |
| heat shock protein hsp15 | SAMN05444000_108104 | Not Available | Positive | 1825529 - 1825903 | 13953.8 |
| ferredoxin | SAMN05444000_108105 | Not Available | Positive | 1825958 - 1826296 | 12715.8 |
| transcriptional regulator, card family | SAMN05444000_108106 | Not Available | Positive | 1826574 - 1827092 | 19242.9 |
| cobalamin-5'-phosphate synthase | SAMN05444000_108107 | Not Available | Negative | 1827222 - 1828007 | 26948.4 |
| nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | SAMN05444000_108108 | Not Available | Positive | 1828053 - 1829063 | 34084.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
