Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444000_10889 | Not Available | Positive | 1813458 - 1813640 | 6988.36 |
| hypothetical protein | SAMN05444000_10890 | Not Available | Negative | 1813651 - 1813839 | 6726.91 |
| ribosomal protein s18 acetylase rimi | SAMN05444000_10891 | Not Available | Positive | 1813904 - 1814389 | 18381.7 |
| Trna-his | Not Available | Not Available | Positive | 1814433 - 1814509 | Not Available |
| hypothetical protein | SAMN05444000_10893 | Not Available | Negative | 1814574 - 1814849 | 9814.2 |
| ribosomal large subunit pseudouridine synthase d | SAMN05444000_10894 | Not Available | Positive | 1814869 - 1815906 | 37332.9 |
| rna polymerase, sigma 32 subunit, rpoh | SAMN05444000_10895 | Not Available | Positive | 1816074 - 1816970 | 33515.0 |
| capsule polysaccharide biosynthesis protein | SAMN05444000_10896 | Not Available | Positive | 1817031 - 1817984 | 36121.2 |
| transcriptional regulator, trar/dksa family | SAMN05444000_10897 | Not Available | Positive | 1818076 - 1818345 | 9732.57 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN05444000_10898 | Not Available | Positive | 1818427 - 1818768 | 12352.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
