Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit gamma | SAMN05444000_10858 | Not Available | Positive | 1786183 - 1786734 | 19493.7 |
| hypothetical protein | SAMN05444000_10859 | Not Available | Positive | 1786778 - 1787086 | 11270.5 |
| dna primase | SAMN05444000_10860 | Not Available | Positive | 1787123 - 1789060 | 71296.2 |
| rna polymerase primary sigma factor | SAMN05444000_10861 | Not Available | Positive | 1789187 - 1791169 | 75278.7 |
| hypothetical protein | SAMN05444000_10862 | Not Available | Positive | 1791269 - 1791562 | 10690.6 |
| uncharacterized oxidoreductase | SAMN05444000_10863 | Not Available | Positive | 1791654 - 1792709 | 37296.4 |
| hypothetical protein | SAMN05444000_10864 | Not Available | Positive | 1792795 - 1793214 | 14889.0 |
| haloalkane dehalogenase | SAMN05444000_10865 | Not Available | Positive | 1793275 - 1794138 | 32352.5 |
| secondary thiamine-phosphate synthase enzyme | SAMN05444000_10866 | Not Available | Positive | 1794208 - 1794627 | 15523.4 |
| transcriptional repressor nrdr | SAMN05444000_10867 | Not Available | Positive | 1794850 - 1795317 | 17974.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
