Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase | SAMN05444000_10828 | Not Available | Negative | 1750183 - 1753593 | 121280.0 |
| transcriptional regulator, asnc family | SAMN05444000_10829 | Not Available | Positive | 1753701 - 1754177 | 17339.0 |
| tetratricopeptide repeat-containing protein | SAMN05444000_10830 | Not Available | Positive | 1754209 - 1754772 | 20672.8 |
| Trna-leu | Not Available | Not Available | Positive | 1754983 - 1755068 | Not Available |
| methionyl-trna synthetase | SAMN05444000_10832 | Not Available | Negative | 1755369 - 1757081 | 64080.9 |
| predicted arabinose efflux permease, mfs family | SAMN05444000_10833 | Not Available | Negative | 1757146 - 1758393 | 43913.3 |
| protein imua | SAMN05444000_10834 | Not Available | Negative | 1758485 - 1759102 | 22565.0 |
| agmatinase | SAMN05444000_10835 | Not Available | Positive | 1759228 - 1760187 | 34368.5 |
| aldo/keto reductase family protein | SAMN05444000_10836 | Not Available | Positive | 1760297 - 1760836 | 19271.3 |
| aldo/keto reductase family protein | SAMN05444000_10837 | Not Available | Positive | 1760791 - 1761339 | 19997.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
