Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted dehydrogenase | SAMN05444000_10818 | Not Available | Positive | 1742035 - 1743060 | 37117.0 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN05444000_10819 | Not Available | Positive | 1743057 - 1744058 | 36389.8 |
| d-tyrosyl-trna(tyr) deacylase | SAMN05444000_10820 | Not Available | Negative | 1744110 - 1744547 | 15425.5 |
| fructokinase | SAMN05444000_10821 | Not Available | Negative | 1744535 - 1745452 | 32190.8 |
| uncharacterized domain 1-containing protein | SAMN05444000_10822 | Not Available | Negative | 1745619 - 1746113 | 17597.4 |
| 5,10-methylenetetrahydrofolate reductase (nad(p)) | SAMN05444000_10823 | Not Available | Negative | 1746181 - 1747047 | 31398.0 |
| lysr family transcriptional regulator, regulator for mete and meth | SAMN05444000_10824 | Not Available | Positive | 1747138 - 1748049 | 33962.0 |
| myo-inositol-1(or 4)-monophosphatase | SAMN05444000_10825 | Not Available | Positive | 1748170 - 1748961 | 28730.5 |
| crispr-associated protein cas8b1/cst1, subtype i-b/tneap | SAMN05444000_10826 | Not Available | Negative | 1749047 - 1749409 | 13400.8 |
| membrane associated serine protease, rhomboid family | SAMN05444000_10827 | Not Available | Negative | 1749406 - 1750152 | 27285.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
