Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
predicted dehydrogenaseSAMN05444000_10818Not AvailablePositive1742035 - 174306037117.0
carbohydrate abc transporter atp-binding protein, cut1 familySAMN05444000_10819Not AvailablePositive1743057 - 174405836389.8
d-tyrosyl-trna(tyr) deacylaseSAMN05444000_10820Not AvailableNegative1744110 - 174454715425.5
fructokinaseSAMN05444000_10821Not AvailableNegative1744535 - 174545232190.8
uncharacterized domain 1-containing proteinSAMN05444000_10822Not AvailableNegative1745619 - 174611317597.4
5,10-methylenetetrahydrofolate reductase (nad(p))SAMN05444000_10823Not AvailableNegative1746181 - 174704731398.0
lysr family transcriptional regulator, regulator for mete and methSAMN05444000_10824Not AvailablePositive1747138 - 174804933962.0
myo-inositol-1(or 4)-monophosphataseSAMN05444000_10825Not AvailablePositive1748170 - 174896128730.5
crispr-associated protein cas8b1/cst1, subtype i-b/tneapSAMN05444000_10826Not AvailableNegative1749047 - 174940913400.8
membrane associated serine protease, rhomboid familySAMN05444000_10827Not AvailableNegative1749406 - 175015227285.7

Displaying genes 1731 – 1740 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.