Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphonoacetate hydrolase | SAMN05444000_1088 | Not Available | Positive | 1733205 - 1733723 | 18384.9 |
| hypothetical protein | SAMN05444000_1089 | Not Available | Positive | 1733779 - 1734021 | 9344.13 |
| n-acetylglucosamine 6-phosphate deacetylase | SAMN05444000_10810 | Not Available | Negative | 1733980 - 1735119 | 40012.2 |
| glutamine--fructose-6-phosphate transaminase | SAMN05444000_10811 | Not Available | Negative | 1735116 - 1736147 | 35985.9 |
| transcriptional regulator, gntr family | SAMN05444000_10812 | Not Available | Negative | 1736157 - 1736915 | 27737.2 |
| glucosamine kinase | SAMN05444000_10813 | Not Available | Negative | 1736912 - 1737808 | 30513.2 |
| n-acetylmuramic acid 6-phosphate etherase | SAMN05444000_10814 | Not Available | Positive | 1737963 - 1738868 | 30670.1 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05444000_10815 | Not Available | Positive | 1738879 - 1740135 | 45469.1 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN05444000_10816 | Not Available | Positive | 1740270 - 1741187 | 34152.6 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN05444000_10817 | Not Available | Positive | 1741199 - 1742038 | 31091.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
