Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytidylate kinase | SAMN05444000_107154 | Not Available | Positive | 1703868 - 1704482 | 21479.6 |
| tupa-like atpgrasp | SAMN05444000_107155 | Not Available | Positive | 1704597 - 1705511 | 34698.4 |
| ssu ribosomal protein s1p | SAMN05444000_107156 | Not Available | Positive | 1705740 - 1707419 | 61300.7 |
| uncharacterized conserved protein yqgv, upf0045/duf77 family | SAMN05444000_107157 | Not Available | Positive | 1707550 - 1707888 | 12221.7 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05444000_107158 | Not Available | Positive | 1707931 - 1708683 | 26428.7 |
| integration host factor subunit beta | SAMN05444000_107159 | Not Available | Positive | 1708943 - 1709224 | 10685.8 |
| protein of unknown function | SAMN05444000_107160 | Not Available | Positive | 1709228 - 1709578 | 13369.6 |
| phosphoribosylanthranilate isomerase | SAMN05444000_107161 | Not Available | Positive | 1709668 - 1710333 | 23946.8 |
| tryptophan synthase, beta chain | SAMN05444000_107162 | Not Available | Positive | 1710406 - 1711644 | 45046.8 |
| fad dependent oxidoreductase | SAMN05444000_107163 | Not Available | Positive | 1711950 - 1713314 | 48925.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
