Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444000_101143 | Not Available | Negative | 146000 - 146188 | 6846.07 |
| 16s rrna (cytosine967-c5)-methyltransferase | SAMN05444000_101144 | Not Available | Positive | 146265 - 147533 | 45479.8 |
| uncharacterized conserved protein, heparinase superfamily | SAMN05444000_101145 | Not Available | Positive | 147655 - 149397 | 63193.8 |
| phosphoribosylaminoimidazolecarboxamide formyltransferase / imp cyclohydrolase | SAMN05444000_101146 | Not Available | Positive | 149416 - 151005 | 56019.8 |
| signal peptidase ii | SAMN05444000_101147 | Not Available | Positive | 151117 - 151587 | 17068.1 |
| beta-barrel assembly machine subunit bamf | SAMN05444000_101148 | Not Available | Positive | 151640 - 152152 | 18147.3 |
| zinc protease | SAMN05444000_101149 | Not Available | Positive | 152243 - 153580 | 49299.2 |
| zinc protease | SAMN05444000_101150 | Not Available | Positive | 153577 - 154875 | 46395.2 |
| aldehyde dehydrogenase (nad+) | SAMN05444000_101151 | Not Available | Negative | 154979 - 157318 | 83418.3 |
| deoxyribose-phosphate aldolase | SAMN05444000_101152 | Not Available | Negative | 157332 - 158324 | 36195.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
