Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter, dha1 family, tetracycline resistance protein | SAMN05444000_107123 | Not Available | Negative | 1676672 - 1677874 | 43051.0 |
| 3-carboxy-cis,cis-muconate cycloisomerase | SAMN05444000_107124 | Not Available | Negative | 1677940 - 1679268 | 46920.4 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05444000_107125 | Not Available | Negative | 1679271 - 1679981 | 25688.4 |
| 3-oxoadipate enol-lactonase | SAMN05444000_107126 | Not Available | Negative | 1679974 - 1680762 | 28603.7 |
| endonuclease/exonuclease/phosphatase family protein | SAMN05444000_107127 | Not Available | Negative | 1680767 - 1681957 | 45004.4 |
| threonine dehydratase | SAMN05444000_107128 | Not Available | Negative | 1682061 - 1683035 | 33977.8 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05444000_107129 | Not Available | Negative | 1683032 - 1683871 | 30387.1 |
| 2-haloacid dehalogenase | SAMN05444000_107130 | Not Available | Negative | 1683873 - 1684625 | 28218.2 |
| fkbp-type peptidyl-prolyl cis-trans isomerase 2 | SAMN05444000_107131 | Not Available | Positive | 1684721 - 1685149 | 14998.7 |
| hypothetical protein | SAMN05444000_107132 | Not Available | Positive | 1685163 - 1685363 | 7400.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
