Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mosc domain-containing protein | SAMN05444000_107103 | Not Available | Positive | 1656026 - 1656652 | 22674.9 |
| formate-tetrahydrofolate ligase | SAMN05444000_107104 | Not Available | Positive | 1656794 - 1658470 | 59957.0 |
| chorismate mutase | SAMN05444000_107105 | Not Available | Positive | 1658525 - 1658830 | 11441.7 |
| methylenetetrahydrofolate dehydrogenase (nadp+) / methenyltetrahydrofolate cyclohydrolase | SAMN05444000_107106 | Not Available | Positive | 1658841 - 1659734 | 31398.2 |
| methenyltetrahydrofolate cyclohydrolase /5,10-methylenetetrahydrofolate dehydrogenase (nadp+) | SAMN05444000_107107 | Not Available | Positive | 1659748 - 1660650 | 31265.0 |
| uncharacterized domain 1-containing protein | SAMN05444000_107108 | Not Available | Negative | 1660717 - 1661127 | 14290.5 |
| transcriptional regulator, lyttr family | SAMN05444000_107109 | Not Available | Positive | 1661216 - 1661929 | 26033.8 |
| putative phosphoesterase | SAMN05444000_107110 | Not Available | Negative | 1662031 - 1662693 | 24179.0 |
| atp-dependent helicase lhr and lhr-like helicase | SAMN05444000_107111 | Not Available | Negative | 1662776 - 1665190 | 88837.8 |
| transcriptional regulator, arsr family | SAMN05444000_107112 | Not Available | Negative | 1665194 - 1665520 | 11818.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
