Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lao/ao transport system kinase | SAMN05444000_10753 | Not Available | Positive | 1611125 - 1612108 | 35297.5 |
| lsu ribosomal protein l28p | SAMN05444000_10754 | Not Available | Positive | 1612344 - 1612634 | 10445.7 |
| hypothetical protein | SAMN05444000_10755 | Not Available | Positive | 1612739 - 1613086 | 12181.2 |
| hypothetical protein | SAMN05444000_10756 | Not Available | Positive | 1613152 - 1613631 | 17275.0 |
| nad-dependent deacetylase | SAMN05444000_10757 | Not Available | Negative | 1613715 - 1614413 | 24952.2 |
| 2-keto-3-deoxy-galactonokinase | SAMN05444000_10758 | Not Available | Positive | 1614532 - 1615128 | 20662.0 |
| protein-tyrosine phosphatase | SAMN05444000_10759 | Not Available | Positive | 1615125 - 1615556 | 15608.4 |
| dimethylglycine dehydrogenase | SAMN05444000_10760 | Not Available | Negative | 1615606 - 1618008 | 87381.6 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05444000_10761 | Not Available | Positive | 1618193 - 1619725 | 54256.9 |
| transcriptional regulator, lysr family | SAMN05444000_10762 | Not Available | Negative | 1619737 - 1620702 | 35235.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
