Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-2 type transport system permease protein | SAMN05444000_10743 | Not Available | Positive | 1598765 - 1599565 | 28506.1 |
| eama-like transporter family protein | SAMN05444000_10744 | Not Available | Negative | 1599640 - 1600515 | 30589.0 |
| acetylornithine aminotransferase apoenzyme | SAMN05444000_10745 | Not Available | Positive | 1600821 - 1602002 | 41484.6 |
| ornithine carbamoyltransferase | SAMN05444000_10746 | Not Available | Positive | 1602008 - 1602934 | 34250.8 |
| ketopantoate reductase | SAMN05444000_10747 | Not Available | Positive | 1603182 - 1604210 | 37579.1 |
| 6-phosphogluconate dehydrogenase | SAMN05444000_10748 | Not Available | Positive | 1604288 - 1605691 | 49622.2 |
| inorganic phosphate transporter, pit family | SAMN05444000_10749 | Not Available | Negative | 1605748 - 1607229 | 51713.2 |
| 8-oxo-dgtp pyrophosphatase mutt, nudix family | SAMN05444000_10750 | Not Available | Negative | 1607316 - 1607774 | 17097.2 |
| atp-dependent helicase hrpb | SAMN05444000_10751 | Not Available | Negative | 1607880 - 1610318 | 89467.9 |
| protein of unknown function | SAMN05444000_10752 | Not Available | Negative | 1610323 - 1611069 | 27436.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
