Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anaerobic selenocysteine-containing dehydrogenase | SAMN05444000_10723 | Not Available | Positive | 1573233 - 1576067 | 104517.0 |
| fe-s-cluster-containing dehydrogenase component | SAMN05444000_10724 | Not Available | Positive | 1576067 - 1576804 | 26518.7 |
| dmso reductase anchor subunit | SAMN05444000_10725 | Not Available | Positive | 1576804 - 1577676 | 30926.5 |
| doubled cxxch motif (paired_cxxch_1) | SAMN05444000_10726 | Not Available | Negative | 1577679 - 1579610 | 70645.8 |
| arylsulfatase | SAMN05444000_10727 | Not Available | Positive | 1579798 - 1581384 | 59736.1 |
| l-alanine-dl-glutamate epimerase | SAMN05444000_10728 | Not Available | Positive | 1581727 - 1582827 | 39283.4 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05444000_10729 | Not Available | Positive | 1582837 - 1583568 | 25071.2 |
| meso-butanediol dehydrogenase / (s,s)-butanediol dehydrogenase / diacetyl reductase | SAMN05444000_10730 | Not Available | Positive | 1583565 - 1584299 | 25765.8 |
| choline-sulfatase | SAMN05444000_10731 | Not Available | Negative | 1584316 - 1585866 | 57994.2 |
| choline-sulfatase | SAMN05444000_10732 | Not Available | Negative | 1585888 - 1587402 | 57453.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
