Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, lrp family | SAMN05444000_10713 | Not Available | Negative | 1560973 - 1561431 | 17092.8 |
| indolepyruvate ferredoxin oxidoreductase | SAMN05444000_10714 | Not Available | Positive | 1561561 - 1564953 | 122842.0 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | SAMN05444000_10715 | Not Available | Positive | 1565009 - 1565386 | 13756.5 |
| 3-hydroxyacyl-coa dehydrogenase | SAMN05444000_10716 | Not Available | Positive | 1565504 - 1567594 | 74230.6 |
| acetyl-coa c-acetyltransferase | SAMN05444000_10717 | Not Available | Positive | 1567609 - 1568784 | 41040.3 |
| acyl-coa dehydrogenase | SAMN05444000_10718 | Not Available | Positive | 1568794 - 1569990 | 43839.2 |
| acyl-coa dehydrogenase | SAMN05444000_10719 | Not Available | Positive | 1570004 - 1571098 | 38828.1 |
| uncharacterized domain 1-containing protein | SAMN05444000_10720 | Not Available | Positive | 1571095 - 1571508 | 14326.3 |
| enoyl-coa hydratase | SAMN05444000_10721 | Not Available | Positive | 1571505 - 1572287 | 27222.8 |
| dna-binding transcriptional regulator, iclr family | SAMN05444000_10722 | Not Available | Positive | 1572290 - 1573051 | 26913.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
