Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glyceraldehyde-3-phosphate dehydrogenase (nad+) | SAMN05444000_1073 | Not Available | Negative | 1550379 - 1551377 | 35681.6 |
| permease of the drug/metabolite transporter (dmt) superfamily | SAMN05444000_1074 | Not Available | Negative | 1551576 - 1552478 | 32273.3 |
| hypothetical protein | SAMN05444000_1075 | Not Available | Positive | 1552549 - 1552806 | 9479.42 |
| cu(i)-responsive transcriptional regulator | SAMN05444000_1076 | Not Available | Negative | 1552807 - 1553199 | 14600.4 |
| cu+-exporting atpase | SAMN05444000_1077 | Not Available | Negative | 1553196 - 1555658 | 85177.5 |
| hypothetical protein | SAMN05444000_1078 | Not Available | Negative | 1555851 - 1556342 | 17634.3 |
| 3-beta hydroxysteroid dehydrogenase/isomerase family protein | SAMN05444000_1079 | Not Available | Negative | 1556349 - 1556906 | 19976.5 |
| transcriptional regulator, arac family | SAMN05444000_10710 | Not Available | Negative | 1557015 - 1558013 | 37153.1 |
| isoquinoline 1-oxidoreductase, alpha subunit | SAMN05444000_10711 | Not Available | Positive | 1558196 - 1558654 | 16194.3 |
| isoquinoline 1-oxidoreductase, beta subunit | SAMN05444000_10712 | Not Available | Positive | 1558657 - 1560897 | 79835.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
