Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| single-strand binding protein | SAMN05444000_106178 | Not Available | Positive | 1533270 - 1533794 | 18418.2 |
| tripeptide aminopeptidase | SAMN05444000_106179 | Not Available | Positive | 1533807 - 1535054 | 44602.7 |
| tryptophan synthase beta chain/tryptophan synthase beta chain | SAMN05444000_106180 | Not Available | Negative | 1535186 - 1536391 | 43106.2 |
| 3-dehydroquinate synthase | SAMN05444000_106181 | Not Available | Negative | 1536537 - 1537649 | 39642.7 |
| shikimate kinase | SAMN05444000_106182 | Not Available | Negative | 1537646 - 1538194 | 20086.3 |
| hypothetical protein | SAMN05444000_106183 | Not Available | Positive | 1538327 - 1538485 | 5354.77 |
| hypothetical protein | SAMN05444000_106184 | Not Available | Positive | 1538475 - 1539986 | 54025.0 |
| integrase/recombinase xerd | SAMN05444000_106185 | Not Available | Positive | 1539991 - 1540923 | 35058.0 |
| mg2+ and co2+ transporter corb, contains duf21, cbs pair, and corc-hlyc domains | SAMN05444000_106186 | Not Available | Positive | 1540936 - 1542318 | 49989.0 |
| permease of the drug/metabolite transporter (dmt) superfamily | SAMN05444000_106187 | Not Available | Positive | 1542468 - 1543367 | 31911.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
