Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sh3 domain-containing protein | SAMN05444000_106168 | Not Available | Negative | 1521236 - 1522741 | 54968.1 |
| uridylate kinase | SAMN05444000_106169 | Not Available | Negative | 1522816 - 1523547 | 26335.8 |
| trna dimethylallyltransferase | SAMN05444000_106170 | Not Available | Positive | 1523667 - 1524548 | 32409.4 |
| arac family transcriptional regulator, transcriptional activator of poba | SAMN05444000_106171 | Not Available | Positive | 1524665 - 1525564 | 33270.3 |
| peptide/nickel transport system permease protein | SAMN05444000_106172 | Not Available | Positive | 1526033 - 1527118 | 39703.4 |
| peptide/nickel transport system permease protein | SAMN05444000_106173 | Not Available | Positive | 1527132 - 1528592 | 52488.6 |
| peptide/nickel transport system atp-binding protein | SAMN05444000_106174 | Not Available | Positive | 1528697 - 1530784 | 76523.6 |
| heme-degrading monooxygenase hmoa | SAMN05444000_106175 | Not Available | Positive | 1530884 - 1531219 | 12428.6 |
| cytochrome c peroxidase | SAMN05444000_106176 | Not Available | Negative | 1531242 - 1532384 | 42489.1 |
| transglycosylase slt domain-containing protein | SAMN05444000_106177 | Not Available | Negative | 1532477 - 1533061 | 21311.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
