Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoic acid synthetase | SAMN05444000_106118 | Not Available | Negative | 1474970 - 1475920 | 35125.1 |
| catalase-peroxidase | SAMN05444000_106119 | Not Available | Positive | 1476181 - 1478373 | 79037.2 |
| peroxiredoxin | SAMN05444000_106120 | Not Available | Positive | 1478536 - 1479081 | 19990.5 |
| predicted dithiol-disulfide isomerase, dsba family | SAMN05444000_106121 | Not Available | Positive | 1479232 - 1479921 | 25577.0 |
| hypothetical protein | SAMN05444000_106122 | Not Available | Negative | 1480017 - 1481147 | 41609.1 |
| hypothetical protein | SAMN05444000_106123 | Not Available | Negative | 1481184 - 1481303 | 4730.7 |
| hypothetical protein | SAMN05444000_106124 | Not Available | Positive | 1481346 - 1481657 | 11722.4 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05444000_106125 | Not Available | Negative | 1481659 - 1483203 | 55655.2 |
| putative mg2+ transporter-c (mgtc) family protein | SAMN05444000_106126 | Not Available | Negative | 1483344 - 1484033 | 24486.3 |
| gmp synthase (glutamine-hydrolyzing) | SAMN05444000_106127 | Not Available | Positive | 1484208 - 1485761 | 57285.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
