Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| von willebrand factor type a domain-containing protein | SAMN05444000_10698 | Not Available | Positive | 1453888 - 1455549 | 58497.7 |
| gtp-binding protein hflx | SAMN05444000_10699 | Not Available | Negative | 1455600 - 1456871 | 46930.2 |
| rna-binding protein hfq | SAMN05444000_106100 | Not Available | Negative | 1456871 - 1457110 | 8964.85 |
| trk system potassium uptake protein trkh | SAMN05444000_106101 | Not Available | Negative | 1457386 - 1458900 | 53991.0 |
| trk system potassium uptake protein trka | SAMN05444000_106102 | Not Available | Negative | 1458904 - 1460280 | 49997.1 |
| hypothetical protein | SAMN05444000_106103 | Not Available | Positive | 1460401 - 1460871 | 16797.9 |
| hypothetical protein | SAMN05444000_106104 | Not Available | Positive | 1460896 - 1461333 | 15801.9 |
| two-component system, ntrc family, nitrogen regulation response regulator ntrx | SAMN05444000_106105 | Not Available | Negative | 1461339 - 1462754 | 52422.7 |
| two-component system, ntrc family, nitrogen regulation sensor histidine kinase ntry | SAMN05444000_106106 | Not Available | Negative | 1462767 - 1465016 | 83718.8 |
| two-component system, ntrc family, nitrogen regulation response regulator glng | SAMN05444000_106107 | Not Available | Negative | 1465120 - 1466484 | 50377.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
