Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, merr family | SAMN05444000_10688 | Not Available | Positive | 1446905 - 1447369 | 17595.2 |
| arginine:pyruvate transaminase | SAMN05444000_10689 | Not Available | Positive | 1447549 - 1448727 | 42470.3 |
| hypothetical protein | SAMN05444000_10690 | Not Available | Positive | 1448815 - 1448907 | 3201.05 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05444000_10691 | Not Available | Positive | 1448951 - 1450489 | 55229.2 |
| ef hand | SAMN05444000_10692 | Not Available | Negative | 1450565 - 1450807 | 8220.75 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05444000_10693 | Not Available | Positive | 1451061 - 1451570 | 18645.6 |
| hypothetical protein | SAMN05444000_10694 | Not Available | Positive | 1451579 - 1451863 | 10828.4 |
| hypothetical protein | SAMN05444000_10695 | Not Available | Positive | 1452284 - 1452520 | 8950.09 |
| rieske | SAMN05444000_10696 | Not Available | Positive | 1452715 - 1452930 | 7668.44 |
| hypothetical protein | SAMN05444000_10697 | Not Available | Positive | 1453172 - 1453471 | 11260.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
