Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacterial peptide chain release factor 1 (brf-1) | SAMN05444000_10628 | Not Available | Negative | 1381836 - 1382891 | 39363.7 |
| protein of unknown function | SAMN05444000_10629 | Not Available | Negative | 1383196 - 1383600 | 15127.2 |
| agmatinase | SAMN05444000_10630 | Not Available | Negative | 1383798 - 1384763 | 34681.7 |
| hippurate hydrolase | SAMN05444000_10631 | Not Available | Negative | 1384914 - 1386086 | 42069.4 |
| atp diphosphatase | SAMN05444000_10632 | Not Available | Positive | 1386118 - 1386978 | 32139.0 |
| iron(iii) transport system substrate-binding protein | SAMN05444000_10633 | Not Available | Positive | 1387063 - 1388076 | 36665.4 |
| dna-binding transcriptional regulator, lysr family | SAMN05444000_10634 | Not Available | Negative | 1388136 - 1388972 | 30534.9 |
| predicted hd phosphohydrolase | SAMN05444000_10635 | Not Available | Positive | 1389071 - 1389661 | 22870.6 |
| protein of unknown function | SAMN05444000_10636 | Not Available | Negative | 1389664 - 1389978 | 11700.4 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN05444000_10637 | Not Available | Negative | 1390390 - 1390731 | 12146.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
