Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii, chi subunit | SAMN05444000_10618 | Not Available | Negative | 1370608 - 1371078 | 17334.3 |
| leucyl aminopeptidase | SAMN05444000_10619 | Not Available | Negative | 1371080 - 1372555 | 51736.5 |
| lipopolysaccharide export system permease protein | SAMN05444000_10620 | Not Available | Positive | 1372707 - 1373804 | 40441.7 |
| lipopolysaccharide export system permease protein | SAMN05444000_10621 | Not Available | Positive | 1373801 - 1374898 | 39960.2 |
| lps-assembly protein | SAMN05444000_10622 | Not Available | Positive | 1374895 - 1377066 | 81552.4 |
| periplasmic chaperone for outer membrane proteins sura | SAMN05444000_10623 | Not Available | Positive | 1377074 - 1378309 | 44868.2 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | SAMN05444000_10624 | Not Available | Positive | 1378306 - 1379283 | 34075.4 |
| dimethyladenosine transferase | SAMN05444000_10625 | Not Available | Positive | 1379306 - 1380148 | 30494.3 |
| protein of unknown function | SAMN05444000_10626 | Not Available | Negative | 1380198 - 1380785 | 22264.6 |
| [protein release factor]-glutamine n5-methyltransferase | SAMN05444000_10627 | Not Available | Negative | 1381000 - 1381839 | 30448.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
