Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase | SAMN05444000_105188 | Not Available | Negative | 1345927 - 1347123 | 42668.4 |
| atp-binding cassette, subfamily b | SAMN05444000_105189 | Not Available | Positive | 1347256 - 1349211 | 71067.7 |
| hypothetical protein | SAMN05444000_105190 | Not Available | Negative | 1349216 - 1349896 | 24516.9 |
| hypothetical protein | SAMN05444000_105191 | Not Available | Positive | 1349969 - 1350709 | 26908.2 |
| translation elongation factor p (ef-p) | SAMN05444000_105192 | Not Available | Negative | 1350806 - 1351369 | 21008.0 |
| hypothetical protein | SAMN05444000_105193 | Not Available | Positive | 1351397 - 1351570 | 6441.99 |
| hypothetical protein | SAMN05444000_105194 | Not Available | Positive | 1351586 - 1351906 | 11568.5 |
| hypothetical protein | SAMN05444000_105195 | Not Available | Negative | 1351992 - 1353281 | 47499.4 |
| outer membrane protein | SAMN05444000_105196 | Not Available | Negative | 1353355 - 1354773 | 50650.3 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN05444000_105197 | Not Available | Negative | 1354825 - 1355478 | 23341.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
