Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator, glycine cleavage system transcriptional activator | SAMN05444000_105178 | Not Available | Negative | 1336509 - 1337465 | 34883.9 |
| phytanoyl-coa dioxygenase (phyh) | SAMN05444000_105179 | Not Available | Positive | 1337514 - 1338401 | 32289.4 |
| hypothetical protein | SAMN05444000_105180 | Not Available | Negative | 1338407 - 1338880 | 16795.0 |
| transcriptional regulator, lyttr family | SAMN05444000_105181 | Not Available | Positive | 1338975 - 1339754 | 28859.6 |
| valyl-trna synthetase | SAMN05444000_105182 | Not Available | Positive | 1339842 - 1343000 | 117042.0 |
| protein of unknown function | SAMN05444000_105183 | Not Available | Positive | 1343119 - 1343445 | 12464.1 |
| enoyl-coa hydratase/carnithine racemase | SAMN05444000_105184 | Not Available | Negative | 1343442 - 1344236 | 28154.4 |
| hypothetical protein | SAMN05444000_105185 | Not Available | Negative | 1344305 - 1344469 | 5908.51 |
| histidinol-phosphate aminotransferase | SAMN05444000_105186 | Not Available | Positive | 1344571 - 1345674 | 39645.2 |
| hypothetical protein | SAMN05444000_105187 | Not Available | Positive | 1345748 - 1345930 | 6738.44 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
