Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulator, glycine cleavage system transcriptional activatorSAMN05444000_105178Not AvailableNegative1336509 - 133746534883.9
phytanoyl-coa dioxygenase (phyh)SAMN05444000_105179Not AvailablePositive1337514 - 133840132289.4
hypothetical proteinSAMN05444000_105180Not AvailableNegative1338407 - 133888016795.0
transcriptional regulator, lyttr familySAMN05444000_105181Not AvailablePositive1338975 - 133975428859.6
valyl-trna synthetaseSAMN05444000_105182Not AvailablePositive1339842 - 1343000117042.0
protein of unknown functionSAMN05444000_105183Not AvailablePositive1343119 - 134344512464.1
enoyl-coa hydratase/carnithine racemaseSAMN05444000_105184Not AvailableNegative1343442 - 134423628154.4
hypothetical proteinSAMN05444000_105185Not AvailableNegative1344305 - 13444695908.51
histidinol-phosphate aminotransferaseSAMN05444000_105186Not AvailablePositive1344571 - 134567439645.2
hypothetical proteinSAMN05444000_105187Not AvailablePositive1345748 - 13459306738.44

Displaying genes 1321 – 1330 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.