Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette protein, chvd family | SAMN05444000_105146 | Not Available | Positive | 1303821 - 1305476 | 61574.9 |
| hypothetical protein | SAMN05444000_105147 | Not Available | Negative | 1305628 - 1306359 | 27150.3 |
| hypothetical protein | SAMN05444000_105148 | Not Available | Positive | 1306758 - 1307129 | 13254.9 |
| histidine phosphatase superfamily (branch 1) | SAMN05444000_105149 | Not Available | Positive | 1307331 - 1307816 | 17159.6 |
| nadph-dependent glutamate synthase beta chain | SAMN05444000_105150 | Not Available | Positive | 1307940 - 1309739 | 66084.5 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit alpha | SAMN05444000_105151 | Not Available | Positive | 1309736 - 1311616 | 68849.7 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit beta | SAMN05444000_105152 | Not Available | Positive | 1311616 - 1312665 | 37527.5 |
| acyl-coa thioesterase ycia | SAMN05444000_105153 | Not Available | Negative | 1312679 - 1313095 | 15000.9 |
| geranylgeranyl reductase family | SAMN05444000_105154 | Not Available | Positive | 1313135 - 1314316 | 42950.4 |
| thioredoxin | SAMN05444000_105155 | Not Available | Negative | 1314304 - 1314735 | 15098.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
