Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN05444000_105136 | Not Available | Negative | 1292740 - 1294230 | 52954.9 |
| transcriptional regulator, arac family with amidase-like domain | SAMN05444000_105137 | Not Available | Negative | 1294332 - 1295378 | 38758.7 |
| transcriptional regulator, gntr family | SAMN05444000_105138 | Not Available | Positive | 1295444 - 1296154 | 26416.6 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN05444000_105139 | Not Available | Positive | 1296162 - 1297094 | 33741.8 |
| gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | SAMN05444000_105140 | Not Available | Positive | 1297098 - 1298597 | 53639.6 |
| glycine/d-amino acid oxidase | SAMN05444000_105141 | Not Available | Positive | 1298602 - 1299942 | 47489.6 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05444000_105142 | Not Available | Negative | 1299956 - 1301512 | 57191.1 |
| threonine/homoserine efflux transporter rhta | SAMN05444000_105143 | Not Available | Positive | 1301692 - 1302531 | 29892.6 |
| nicotinate-nucleotide adenylyltransferase | SAMN05444000_105144 | Not Available | Negative | 1302528 - 1303130 | 22485.0 |
| hypothetical protein | SAMN05444000_105145 | Not Available | Positive | 1303173 - 1303727 | 21109.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
