Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN05444000_105126 | Not Available | Negative | 1284454 - 1285299 | 31033.7 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN05444000_105127 | Not Available | Negative | 1285299 - 1286207 | 34579.2 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05444000_105128 | Not Available | Negative | 1286317 - 1287633 | 47618.5 |
| transcriptional regulator, iclr family | SAMN05444000_105129 | Not Available | Positive | 1287764 - 1288534 | 28046.7 |
| d-threo-aldose 1-dehydrogenase | SAMN05444000_105130 | Not Available | Positive | 1288537 - 1289541 | 35379.3 |
| l-fuconolactonase | SAMN05444000_105131 | Not Available | Positive | 1289560 - 1290387 | 30633.4 |
| hypothetical protein | SAMN05444000_105132 | Not Available | Positive | 1290792 - 1290962 | 5997.05 |
| putative transposase | SAMN05444000_105133 | Not Available | Positive | 1290962 - 1291699 | 28047.3 |
| hypothetical protein | SAMN05444000_105134 | Not Available | Positive | 1291707 - 1291838 | 4748.72 |
| sulfotransferase family protein | SAMN05444000_105135 | Not Available | Positive | 1291851 - 1292297 | 17221.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
