Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dimethylglycine dehydrogenase | SAMN05444000_10586 | Not Available | Negative | 1244009 - 1246465 | 90669.4 |
| transcriptional regulator, rpir family | SAMN05444000_10587 | Not Available | Positive | 1246538 - 1247425 | 32648.6 |
| phenylpropionate dioxygenase, large terminal subunit | SAMN05444000_10588 | Not Available | Positive | 1247422 - 1248288 | 33019.7 |
| ring hydroxylating alpha subunit (catalytic domain) | SAMN05444000_10589 | Not Available | Positive | 1248316 - 1248513 | 7340.76 |
| hypothetical protein | SAMN05444000_10590 | Not Available | Positive | 1248622 - 1249446 | 30601.3 |
| hypothetical protein | SAMN05444000_10591 | Not Available | Positive | 1249502 - 1250179 | 25864.6 |
| 4-carboxymuconolactone decarboxylase | SAMN05444000_10592 | Not Available | Positive | 1250196 - 1250579 | 14224.2 |
| transcriptional regulator, asnc family | SAMN05444000_10593 | Not Available | Negative | 1250581 - 1251000 | 15454.7 |
| aldehyde dehydrogenase (nad+) | SAMN05444000_10594 | Not Available | Positive | 1251133 - 1252656 | 53883.6 |
| saccharopine dehydrogenase, nadp-dependent | SAMN05444000_10595 | Not Available | Positive | 1252666 - 1253724 | 38246.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
