Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444000_10566 | Not Available | Positive | 1222578 - 1223135 | 20554.7 |
| transcriptional regulator, xre family with cupin sensor | SAMN05444000_10567 | Not Available | Negative | 1223132 - 1223698 | 20370.4 |
| 4-aminobutyrate aminotransferase apoenzyme | SAMN05444000_10568 | Not Available | Positive | 1223852 - 1225132 | 45195.4 |
| nadph:quinone reductase | SAMN05444000_10569 | Not Available | Negative | 1225198 - 1226247 | 37258.6 |
| transcriptional regulator, iclr family | SAMN05444000_10570 | Not Available | Negative | 1226340 - 1227122 | 28494.7 |
| trap transporter, dctm subunit | SAMN05444000_10571 | Not Available | Negative | 1227156 - 1228517 | 47807.1 |
| trap-type c4-dicarboxylate transport system, small permease component | SAMN05444000_10572 | Not Available | Negative | 1228528 - 1229193 | 24902.8 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05444000_10573 | Not Available | Negative | 1229293 - 1230525 | 45281.8 |
| choline dehydrogenase | SAMN05444000_10574 | Not Available | Positive | 1230655 - 1232271 | 59171.5 |
| sulfoacetaldehyde acetyltransferase | SAMN05444000_10575 | Not Available | Positive | 1232389 - 1234164 | 63723.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
