Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate ferredoxin oxidoreductase beta subunit | SAMN05444000_10556 | Not Available | Negative | 1208805 - 1209707 | 32771.3 |
| indolepyruvate ferredoxin oxidoreductase alpha subunit | SAMN05444000_10557 | Not Available | Negative | 1209700 - 1211649 | 70291.6 |
| uncharacterized protein | SAMN05444000_10558 | Not Available | Positive | 1211742 - 1212971 | 46311.2 |
| hypothetical protein | SAMN05444000_10559 | Not Available | Positive | 1213092 - 1214837 | 64078.6 |
| gtpase, g3e family | SAMN05444000_10560 | Not Available | Positive | 1214834 - 1215757 | 33242.6 |
| transcriptional regulator, lysr family | SAMN05444000_10561 | Not Available | Negative | 1215851 - 1216747 | 32747.6 |
| aspartate aminotransferase | SAMN05444000_10562 | Not Available | Positive | 1216780 - 1218057 | 45622.6 |
| glutaryl-coa dehydrogenase | SAMN05444000_10563 | Not Available | Positive | 1218069 - 1219283 | 43678.4 |
| branched-chain alpha-keto acid dehydrogenase e1 component | SAMN05444000_10564 | Not Available | Positive | 1219304 - 1221487 | 78904.0 |
| [acyl-carrier-protein] s-malonyltransferase | SAMN05444000_10565 | Not Available | Positive | 1221484 - 1222506 | 36849.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
