Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alkane 1-monooxygenase | SAMN05444000_10536 | Not Available | Negative | 1188462 - 1189607 | 43994.7 |
| cytochrome p450 | SAMN05444000_10537 | Not Available | Negative | 1189604 - 1191025 | 53885.9 |
| crp/fnr family transcriptional regulator, anaerobic regulatory protein/crp/fnr family transcriptional regulator, nitrogen fixation regulation protein | SAMN05444000_10538 | Not Available | Positive | 1191238 - 1191954 | 26797.1 |
| mycofactocin system fadh/oye family oxidoreductase 2 | SAMN05444000_10539 | Not Available | Negative | 1191951 - 1193912 | 69210.2 |
| dna-binding transcriptional regulator, lrp family | SAMN05444000_10540 | Not Available | Negative | 1193985 - 1194434 | 17101.8 |
| hippurate hydrolase | SAMN05444000_10541 | Not Available | Positive | 1194559 - 1195701 | 40375.4 |
| diaminopropionate ammonia-lyase | SAMN05444000_10542 | Not Available | Positive | 1195705 - 1196895 | 42055.7 |
| xaa-pro aminopeptidase | SAMN05444000_10543 | Not Available | Positive | 1196888 - 1198054 | 42236.7 |
| maleate isomerase | SAMN05444000_10544 | Not Available | Positive | 1198065 - 1198805 | 26372.7 |
| response regulator receiver domain-containing protein | SAMN05444000_10545 | Not Available | Positive | 1198995 - 1200089 | 40479.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
