Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine transport system atp-binding protein | SAMN05444000_10516 | Not Available | Positive | 1163596 - 1164699 | 39648.1 |
| methyltransferase domain-containing protein | SAMN05444000_10517 | Not Available | Positive | 1164741 - 1165523 | 28598.7 |
| hypothetical protein | SAMN05444000_10518 | Not Available | Negative | 1165645 - 1166004 | 12942.2 |
| spermidine/putrescine transport system substrate-binding protein | SAMN05444000_10519 | Not Available | Negative | 1166094 - 1167158 | 39282.5 |
| dimethylamine/trimethylamine dehydrogenase | SAMN05444000_10520 | Not Available | Positive | 1167308 - 1169350 | 74798.6 |
| adenosylmethionine-8-amino-7-oxononanoate aminotransferase | SAMN05444000_10521 | Not Available | Negative | 1169443 - 1170825 | 51102.9 |
| aminomethyltransferase | SAMN05444000_10522 | Not Available | Negative | 1170844 - 1172037 | 44714.6 |
| phytoene dehydrogenase-related protein | SAMN05444000_10523 | Not Available | Negative | 1172034 - 1173602 | 54266.9 |
| phytoene dehydrogenase-related protein | SAMN05444000_10524 | Not Available | Negative | 1173614 - 1175251 | 59658.6 |
| transcriptional regulator, tetr family | SAMN05444000_10525 | Not Available | Positive | 1175397 - 1176044 | 24726.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
