Shimia gijangensis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia gijangensis is a Gram-negative bacterium characterized by a single replicon in its genomic structure. The complete genome of Shimia gijangensis is cataloged under the accession number FQZQ00000000.1. This classification as a Gram-negative organism indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical of this group of bacteria. The presence of a single replicon suggests a streamlined genomic organization, which can influence aspects of its physiology and replication. Such bacteria often exhibit unique metabolic pathways and ecological roles, which can be significant in various environments. Understanding the traits of Shimia gijangensis may provide insights into its ecological niche and potential applications in biotechnology or environmental microbiology. Further studies could explore its interactions within microbial communities and its role in biogeochemical cycles, thereby contributing to a broader understanding of microbial ecology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia gijangensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudopelagicola gijangensis strain DSM 100564 genome assembly,

Gene Summary

Adenine Count

920331 bp

Thymine Count

925384 bp

Guanine Count

1137401 bp

Cytosine Count

1111454 bp

Genome Length

4094570 bp

Protein-coding Genes

3992 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spermidine/putrescine transport system atp-binding proteinSAMN05444000_10516Not AvailablePositive1163596 - 116469939648.1
methyltransferase domain-containing proteinSAMN05444000_10517Not AvailablePositive1164741 - 116552328598.7
hypothetical proteinSAMN05444000_10518Not AvailableNegative1165645 - 116600412942.2
spermidine/putrescine transport system substrate-binding proteinSAMN05444000_10519Not AvailableNegative1166094 - 116715839282.5
dimethylamine/trimethylamine dehydrogenaseSAMN05444000_10520Not AvailablePositive1167308 - 116935074798.6
adenosylmethionine-8-amino-7-oxononanoate aminotransferaseSAMN05444000_10521Not AvailableNegative1169443 - 117082551102.9
aminomethyltransferaseSAMN05444000_10522Not AvailableNegative1170844 - 117203744714.6
phytoene dehydrogenase-related proteinSAMN05444000_10523Not AvailableNegative1172034 - 117360254266.9
phytoene dehydrogenase-related proteinSAMN05444000_10524Not AvailableNegative1173614 - 117525159658.6
transcriptional regulator, tetr familySAMN05444000_10525Not AvailablePositive1175397 - 117604424726.2

Displaying genes 1161 – 1170 of 4053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.