Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ser | Not Available | Not Available | Positive | 1140232 - 1140321 | Not Available |
| site-specific dna recombinase | SAMN05444000_104244 | Not Available | Negative | 1140705 - 1142393 | 62433.9 |
| protein of unknown function | SAMN05444000_104245 | Not Available | Negative | 1142390 - 1142806 | 15503.8 |
| hypothetical protein | SAMN05444000_104246 | Not Available | Positive | 1143165 - 1143326 | 5979.24 |
| dna methylase | SAMN05444000_104247 | Not Available | Positive | 1143338 - 1144393 | 39224.6 |
| ornithine cyclodeaminase | SAMN05444000_1051 | Not Available | Negative | 1144667 - 1145632 | 33911.3 |
| d-3-hydroxyaspartate aldolase | SAMN05444000_1052 | Not Available | Negative | 1145713 - 1146879 | 41751.7 |
| threonine dehydratase | SAMN05444000_1053 | Not Available | Negative | 1146897 - 1147850 | 33942.6 |
| serine-glyoxylate aminotransferase apoenzyme | SAMN05444000_1054 | Not Available | Negative | 1147868 - 1149058 | 42124.5 |
| transcriptional regulator, iclr family | SAMN05444000_1055 | Not Available | Positive | 1149255 - 1150082 | 29858.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
