Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein involved in chromosome partitioning | SAMN05444000_104223 | Not Available | Positive | 1122134 - 1123207 | 36982.3 |
| conserved hypothetical protein | SAMN05444000_104224 | Not Available | Negative | 1123266 - 1123574 | 10533.6 |
| hint domain-containing protein | SAMN05444000_104225 | Not Available | Positive | 1123756 - 1124781 | 36413.9 |
| uncharacterized membrane protein | SAMN05444000_104226 | Not Available | Negative | 1124797 - 1125189 | 14858.2 |
| cytochrome c oxidase subunit 1 | SAMN05444000_104227 | Not Available | Negative | 1125421 - 1127091 | 61953.0 |
| 2-methylisocitrate lyase, pep mutase family | SAMN05444000_104228 | Not Available | Positive | 1127403 - 1128245 | 29707.1 |
| cytochrome c | SAMN05444000_104229 | Not Available | Negative | 1128314 - 1128760 | 15171.8 |
| lipoyl(octanoyl) transferase | SAMN05444000_104230 | Not Available | Negative | 1129202 - 1129852 | 24233.8 |
| Trna-leu | Not Available | Not Available | Positive | 1130047 - 1130133 | Not Available |
| hypothetical protein | SAMN05444000_104232 | Not Available | Positive | 1130289 - 1130666 | 13403.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
