Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | Positive | 1110499 - 1110573 | Not Available |
| hypothetical protein | SAMN05444000_104214 | Not Available | Positive | 1110693 - 1111070 | 13271.4 |
| yhyh protein | SAMN05444000_104215 | Not Available | Positive | 1111096 - 1112001 | 32234.4 |
| hypothetical protein | SAMN05444000_104216 | Not Available | Positive | 1112090 - 1112950 | 33241.0 |
| uncharacterized conserved protein | SAMN05444000_104217 | Not Available | Negative | 1112947 - 1113315 | 13497.0 |
| pyruvate carboxylase | SAMN05444000_104218 | Not Available | Negative | 1113369 - 1116812 | 125730.0 |
| rhodanese-related sulfurtransferase | SAMN05444000_104219 | Not Available | Positive | 1117047 - 1117505 | 16324.7 |
| l-lactate dehydrogenase (cytochrome) | SAMN05444000_104220 | Not Available | Negative | 1117502 - 1118635 | 41450.0 |
| atp-dependent dna helicase, rep family | SAMN05444000_104221 | Not Available | Positive | 1118664 - 1121156 | 92342.2 |
| uncharacterized conserved protein yjis, duf1127 family | SAMN05444000_104222 | Not Available | Negative | 1121676 - 1121891 | 8030.68 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
