Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit c | SAMN05444000_104192 | Not Available | Positive | 1095461 - 1095748 | 10470.5 |
| aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit a | SAMN05444000_104193 | Not Available | Positive | 1095748 - 1097235 | 52444.3 |
| hypothetical protein | SAMN05444000_104194 | Not Available | Positive | 1097269 - 1098057 | 26718.9 |
| n-acetylmuramoyl-l-alanine amidase | SAMN05444000_104195 | Not Available | Positive | 1098139 - 1098732 | 22079.4 |
| hypothetical protein | SAMN05444000_104197 | Not Available | Positive | 1098840 - 1098986 | 4996.03 |
| hypothetical protein | SAMN05444000_104198 | Not Available | Negative | 1099253 - 1100002 | 26866.2 |
| arylsulfatase | SAMN05444000_104199 | Not Available | Negative | 1100061 - 1101698 | 60695.8 |
| hypothetical protein | SAMN05444000_104200 | Not Available | Negative | 1101695 - 1101925 | 8501.22 |
| helix-turn-helix domain-containing protein | SAMN05444000_104201 | Not Available | Positive | 1102040 - 1102951 | 33558.3 |
| lsu ribosomal protein l33p | SAMN05444000_104202 | Not Available | Positive | 1103098 - 1103265 | 6380.96 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
