Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protease subunit, stomatin/prohibitin family, contains c-terminal zn-ribbon domain | SAMN05444000_104182 | Not Available | Negative | 1086314 - 1087435 | 40510.3 |
| protein of unknown function | SAMN05444000_104183 | Not Available | Negative | 1087457 - 1088359 | 32605.8 |
| uncharacterized conserved protein yaan involved in tellurite resistance | SAMN05444000_104184 | Not Available | Negative | 1088390 - 1089589 | 43775.8 |
| 5-bromo-4-chloroindolyl phosphate hydrolysis protein | SAMN05444000_104185 | Not Available | Negative | 1089609 - 1090493 | 32225.7 |
| membrane protein terc, possibly involved in tellurium resistance | SAMN05444000_104186 | Not Available | Negative | 1090690 - 1091508 | 29913.3 |
| 23s rrna pseudouridine2605 synthase | SAMN05444000_104187 | Not Available | Negative | 1091684 - 1092478 | 29812.2 |
| trna(arg) a34 adenosine deaminase tada | SAMN05444000_104188 | Not Available | Positive | 1092541 - 1092993 | 16010.0 |
| adenylate cyclase, class 3 | SAMN05444000_104189 | Not Available | Negative | 1092990 - 1093964 | 35575.0 |
| l-ascorbate metabolism protein ulag, beta-lactamase superfamily | SAMN05444000_104190 | Not Available | Negative | 1093969 - 1094661 | 24886.9 |
| ceramidase | SAMN05444000_104191 | Not Available | Positive | 1094723 - 1095367 | 23467.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
