Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytidine1402-2'-o)-methyltransferase | SAMN05444000_104142 | Not Available | Positive | 1045687 - 1046514 | 29348.2 |
| putative endonuclease | SAMN05444000_104143 | Not Available | Positive | 1046555 - 1046938 | 14285.0 |
| glutathione synthase | SAMN05444000_104144 | Not Available | Positive | 1047002 - 1047937 | 34999.7 |
| magnesium chelatase family protein | SAMN05444000_104145 | Not Available | Negative | 1047941 - 1049449 | 53186.0 |
| glutathione s-transferase | SAMN05444000_104146 | Not Available | Negative | 1049578 - 1050450 | 32113.1 |
| broad specificity phosphatase phoe | SAMN05444000_104147 | Not Available | Negative | 1050509 - 1051084 | 21241.0 |
| adenosylcobinamide kinase /adenosylcobinamide-phosphate guanylyltransferase | SAMN05444000_104148 | Not Available | Negative | 1051081 - 1051602 | 18387.3 |
| rna polymerase, sigma 32 subunit, rpoh | SAMN05444000_104149 | Not Available | Positive | 1051697 - 1052575 | 33353.8 |
| uncharacterized iron-regulated protein | SAMN05444000_104150 | Not Available | Positive | 1052572 - 1053372 | 29202.6 |
| phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase | SAMN05444000_104151 | Not Available | Positive | 1053438 - 1054631 | 41693.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
