Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05444000_104132 | Not Available | Negative | 1032880 - 1033944 | 38616.7 |
| nucleotide-binding universal stress protein, uspa family | SAMN05444000_104133 | Not Available | Negative | 1033946 - 1034401 | 16816.3 |
| branched-chain amino acid aminotransferase | SAMN05444000_104134 | Not Available | Negative | 1034474 - 1035340 | 31734.7 |
| hypothetical protein | SAMN05444000_104135 | Not Available | Negative | 1035484 - 1037367 | 68923.3 |
| tryptophanyl-trna synthetase | SAMN05444000_104136 | Not Available | Negative | 1037596 - 1038630 | 37768.4 |
| rhomboid family protein | SAMN05444000_104137 | Not Available | Positive | 1038704 - 1039390 | 24729.8 |
| uncharacterized membrane protein hded, duf308 family | SAMN05444000_104138 | Not Available | Negative | 1039462 - 1039989 | 18485.8 |
| putative peptidoglycan lipid ii flippase | SAMN05444000_104139 | Not Available | Negative | 1040085 - 1041629 | 54997.7 |
| utp--glnb (protein pii) uridylyltransferase, glnd | SAMN05444000_104140 | Not Available | Negative | 1041626 - 1044385 | 104803.0 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05444000_104141 | Not Available | Negative | 1044396 - 1045556 | 38991.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
