Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase subunit c | SAMN05444000_104102 | Not Available | Positive | 1003164 - 1003547 | 14041.3 |
| succinate dehydrogenase subunit d | SAMN05444000_104103 | Not Available | Positive | 1003558 - 1003929 | 13235.5 |
| succinate dehydrogenase subunit a | SAMN05444000_104104 | Not Available | Positive | 1003946 - 1005751 | 65078.8 |
| methyltransferase, fkbm family | SAMN05444000_104105 | Not Available | Positive | 1005762 - 1006472 | 26565.5 |
| succinate dehydrogenase subunit b | SAMN05444000_104106 | Not Available | Positive | 1006518 - 1007297 | 29476.7 |
| zinc transporter, zip family | SAMN05444000_104107 | Not Available | Positive | 1007405 - 1008124 | 24911.2 |
| hypothetical protein | SAMN05444000_104108 | Not Available | Positive | 1008217 - 1009854 | 58592.7 |
| d-cysteine desulfhydrase/l-cysteate sulfo-lyase | SAMN05444000_104109 | Not Available | Positive | 1009938 - 1010903 | 34170.0 |
| hypothetical protein | SAMN05444000_104110 | Not Available | Positive | 1010984 - 1011826 | 30441.0 |
| glycine hydroxymethyltransferase | SAMN05444000_104111 | Not Available | Negative | 1011905 - 1013227 | 46411.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
