Agrobacterium fabrum str. 1D132

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. 1D132 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. It is classified as an aerobe, requiring oxygen for its metabolic processes. This organism thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, indicating that it prefers moderate temperatures for growth. A. fabrum str. 1D132 possesses five replicons and has a distinctive double-membrane structure, which is characteristic of Gram-negative bacteria. Its biotic relationship is classified as free-living, suggesting that it does not depend on a host organism for survival and can thrive in various habitats. The organism is cataloged under several accessions, including NZ_CP033024.1, NZ_CP033025.1, NZ_CP033022.1, NZ_CP033023.1, and NZ_CP033026.1, which likely represent different genomic sequences or strains relevant to research. The ecological insight into A. fabrum str. 1D132 highlights its adaptability to multiple habitats and its role in nutrient cycling within ecosystems. Being a free-living bacterium, it may contribute to soil health and fertility, playing a significant role in the interactions within microbial communities. This adaptability and free-living nature underscore the importance of A. fabrum str. 1D132 in various ecological contexts, possibly influencing plant health and growth through its interactions with the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strain1D132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. 1D132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 1D132 chromosome linear, complete

Gene Summary

Adenine Count

409533 bp

Thymine Count

410307 bp

Guanine Count

595904 bp

Cytosine Count

598154 bp

Genome Length

2013898 bp

Protein-coding Genes

1760 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cysteine synthase aAt1D132_RS14710Not AvailableNegative2895028 - 289599633624.8
lyse family translocatorAt1D132_RS14715Not AvailableNegative2896137 - 289675421896.0
dutp diphosphataseAt1D132_RS14720Not AvailableNegative2896832 - 289730216586.8
peptide chain release factor 3At1D132_RS14725Not AvailablePositive2897392 - 289897558820.7
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcAt1D132_RS14730Not AvailablePositive2899046 - 290025142394.5
mmcq/yjbr family dna-binding proteinAt1D132_RS14735Not AvailablePositive2900248 - 290062214266.0
sterol desaturase family proteinAt1D132_RS14740Not AvailableNegative2900630 - 290154433903.4
2-polyprenylphenol 6-hydroxylaseAt1D132_RS14745Not AvailableNegative2902025 - 290359958202.9
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieAt1D132_RS14750Not AvailableNegative2903636 - 290441228732.3
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseAt1D132_RS14755Not AvailablePositive2904556 - 290545232636.1

Displaying genes 4781 – 4790 of 5211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.