Agrobacterium fabrum str. 1D132

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. 1D132 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. It is classified as an aerobe, requiring oxygen for its metabolic processes. This organism thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, indicating that it prefers moderate temperatures for growth. A. fabrum str. 1D132 possesses five replicons and has a distinctive double-membrane structure, which is characteristic of Gram-negative bacteria. Its biotic relationship is classified as free-living, suggesting that it does not depend on a host organism for survival and can thrive in various habitats. The organism is cataloged under several accessions, including NZ_CP033024.1, NZ_CP033025.1, NZ_CP033022.1, NZ_CP033023.1, and NZ_CP033026.1, which likely represent different genomic sequences or strains relevant to research. The ecological insight into A. fabrum str. 1D132 highlights its adaptability to multiple habitats and its role in nutrient cycling within ecosystems. Being a free-living bacterium, it may contribute to soil health and fertility, playing a significant role in the interactions within microbial communities. This adaptability and free-living nature underscore the importance of A. fabrum str. 1D132 in various ecological contexts, possibly influencing plant health and growth through its interactions with the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strain1D132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. 1D132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 1D132 chromosome linear, complete

Gene Summary

Adenine Count

409533 bp

Thymine Count

410307 bp

Guanine Count

595904 bp

Cytosine Count

598154 bp

Genome Length

2013898 bp

Protein-coding Genes

1760 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmdAt1D132_RS10530Not AvailablePositive2040762 - 204152928470.4
response regulatorAt1D132_RS10535Not AvailableNegative2041557 - 2045252136512.0
dead/deah box helicaseAt1D132_RS10540Not AvailablePositive2045719 - 204719153249.0
dmt family transporterAt1D132_RS10545Not AvailableNegative2047282 - 204819032000.3
doxx family proteinAt1D132_RS10550Not AvailableNegative2048353 - 204874213776.3
l,d-transpeptidaseAt1D132_RS10555Not AvailableNegative2048984 - 204960122595.5
dmt family transporterAt1D132_RS10560Not AvailableNegative2049680 - 205057631432.7
circularly permuted type 2 atp-grasp proteinAt1D132_RS10565Not AvailablePositive2051021 - 205243052688.2
alpha-e domain-containing proteinAt1D132_RS10570Not AvailablePositive2052434 - 205337535808.5
transglutaminase domain-containing proteinAt1D132_RS10575Not AvailablePositive2053397 - 205421829928.6

Displaying genes 3981 – 3990 of 5211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.