Agrobacterium fabrum str. 1D132

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. 1D132 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. It is classified as an aerobe, requiring oxygen for its metabolic processes. This organism thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, indicating that it prefers moderate temperatures for growth. A. fabrum str. 1D132 possesses five replicons and has a distinctive double-membrane structure, which is characteristic of Gram-negative bacteria. Its biotic relationship is classified as free-living, suggesting that it does not depend on a host organism for survival and can thrive in various habitats. The organism is cataloged under several accessions, including NZ_CP033024.1, NZ_CP033025.1, NZ_CP033022.1, NZ_CP033023.1, and NZ_CP033026.1, which likely represent different genomic sequences or strains relevant to research. The ecological insight into A. fabrum str. 1D132 highlights its adaptability to multiple habitats and its role in nutrient cycling within ecosystems. Being a free-living bacterium, it may contribute to soil health and fertility, playing a significant role in the interactions within microbial communities. This adaptability and free-living nature underscore the importance of A. fabrum str. 1D132 in various ecological contexts, possibly influencing plant health and growth through its interactions with the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strain1D132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. 1D132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 1D132 chromosome linear, complete

Gene Summary

Adenine Count

409533 bp

Thymine Count

410307 bp

Guanine Count

595904 bp

Cytosine Count

598154 bp

Genome Length

2013898 bp

Protein-coding Genes

1760 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanine ligaseAt1D132_RS09390Not AvailableNegative1803708 - 180514150753.9
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseAt1D132_RS09395Not AvailableNegative1805138 - 180660751221.2
peptidoglycan d,d-transpeptidase ftsi family proteinAt1D132_RS09400Not AvailableNegative1806665 - 180840762861.6
hypothetical proteinAt1D132_RS09405Not AvailableNegative1808407 - 180896719811.0
16s rrna (cytosine(1402)-n(4))-methyltransferase rsmhAt1D132_RS09410Not AvailableNegative1808969 - 180999436353.7
division/cell wall cluster transcriptional repressor mrazAt1D132_RS09415Not AvailableNegative1810009 - 181044916125.3
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive1810851 - 1811252Not Available
nad(p)/fad-dependent oxidoreductaseAt1D132_RS09425Not AvailableNegative1811309 - 181249942376.1
nad(p)/fad-dependent oxidoreductaseAt1D132_RS09430Not AvailableNegative1812559 - 181374641980.0
lytic transglycosylase domain-containing proteinAt1D132_RS09435Not AvailableNegative1813838 - 181437719237.5

Displaying genes 3761 – 3770 of 5211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.