Agrobacterium fabrum str. 1D132

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. 1D132 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. It is classified as an aerobe, requiring oxygen for its metabolic processes. This organism thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, indicating that it prefers moderate temperatures for growth. A. fabrum str. 1D132 possesses five replicons and has a distinctive double-membrane structure, which is characteristic of Gram-negative bacteria. Its biotic relationship is classified as free-living, suggesting that it does not depend on a host organism for survival and can thrive in various habitats. The organism is cataloged under several accessions, including NZ_CP033024.1, NZ_CP033025.1, NZ_CP033022.1, NZ_CP033023.1, and NZ_CP033026.1, which likely represent different genomic sequences or strains relevant to research. The ecological insight into A. fabrum str. 1D132 highlights its adaptability to multiple habitats and its role in nutrient cycling within ecosystems. Being a free-living bacterium, it may contribute to soil health and fertility, playing a significant role in the interactions within microbial communities. This adaptability and free-living nature underscore the importance of A. fabrum str. 1D132 in various ecological contexts, possibly influencing plant health and growth through its interactions with the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strain1D132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. 1D132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 1D132 chromosome linear, complete

Gene Summary

Adenine Count

409533 bp

Thymine Count

410307 bp

Guanine Count

595904 bp

Cytosine Count

598154 bp

Genome Length

2013898 bp

Protein-coding Genes

1760 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative colanic acid biosynthesis acetyltransferaseAt1D132_RS23620Not AvailablePositive1942839 - 194344722352.1
glycosyltransferaseAt1D132_RS23625Not AvailableNegative1943411 - 194458642638.5
glycosyltransferase family 4 proteinAt1D132_RS23630Not AvailableNegative1944583 - 194586646521.4
glycosyltransferase family 4 proteinAt1D132_RS23635Not AvailableNegative1945863 - 194711646498.6
lrp/asnc family transcriptional regulatorAt1D132_RS23640Not AvailableNegative1947504 - 194802219328.5
duf296 domain-containing proteinAt1D132_RS23645Not AvailablePositive1948183 - 194874920087.1
ppc domain-containing dna-binding proteinAt1D132_RS23650Not AvailablePositive1948736 - 194914314049.8
duf296 domain-containing proteinAt1D132_RS23655Not AvailableNegative1949182 - 195007531983.3
sdr family nad(p)-dependent oxidoreductaseAt1D132_RS23660Not AvailableNegative1950072 - 195085127171.4
acyl-coa synthetaseAt1D132_RS23665Not AvailableNegative1950883 - 195252359628.1

Displaying genes 1711 – 1720 of 5211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.