Agrobacterium fabrum str. 1D132

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum str. 1D132 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. It is classified as an aerobe, requiring oxygen for its metabolic processes. This organism thrives optimally at a temperature of 25°C and falls within the mesophilic temperature range, indicating that it prefers moderate temperatures for growth. A. fabrum str. 1D132 possesses five replicons and has a distinctive double-membrane structure, which is characteristic of Gram-negative bacteria. Its biotic relationship is classified as free-living, suggesting that it does not depend on a host organism for survival and can thrive in various habitats. The organism is cataloged under several accessions, including NZ_CP033024.1, NZ_CP033025.1, NZ_CP033022.1, NZ_CP033023.1, and NZ_CP033026.1, which likely represent different genomic sequences or strains relevant to research. The ecological insight into A. fabrum str. 1D132 highlights its adaptability to multiple habitats and its role in nutrient cycling within ecosystems. Being a free-living bacterium, it may contribute to soil health and fertility, playing a significant role in the interactions within microbial communities. This adaptability and free-living nature underscore the importance of A. fabrum str. 1D132 in various ecological contexts, possibly influencing plant health and growth through its interactions with the environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
Strain1D132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. 1D132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain 1D132 chromosome linear, complete

Gene Summary

Adenine Count

409533 bp

Thymine Count

410307 bp

Guanine Count

595904 bp

Cytosine Count

598154 bp

Genome Length

2013898 bp

Protein-coding Genes

1760 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxybenzoate 3-monooxygenaseAt1D132_RS22270Not AvailableNegative1626806 - 162797843760.9
helix-turn-helix domain-containing proteinAt1D132_RS22275Not AvailablePositive1628096 - 162901934219.4
iclr family transcriptional regulatorAt1D132_RS22280Not AvailableNegative1628989 - 162975027530.8
3-oxoacid coa-transferase subunit aAt1D132_RS22285Not AvailablePositive1629889 - 163059624800.9
coa transferase subunit bAt1D132_RS22290Not AvailablePositive1630593 - 163128824732.7
3-oxoadipyl-coa thiolaseAt1D132_RS22295Not AvailablePositive1631299 - 163250441617.0
laci family dna-binding transcriptional regulatorAt1D132_RS22300Not AvailablePositive1632988 - 163401638112.3
sugar abc transporter substrate-binding proteinAt1D132_RS22305Not AvailablePositive1634300 - 163524133095.4
substrate-binding domain-containing proteinAt1D132_RS22310Not AvailablePositive1635394 - 163630231633.8
sugar phosphate isomerase/epimerase family proteinAt1D132_RS22315Not AvailablePositive1636351 - 163724734424.0

Displaying genes 1441 – 1450 of 5211 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.