Alistipes finegoldii DSM 17242

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes finegoldii DSM 17242 is classified as a mesophile, a chemoheterotrophic organism that produces energy through fermentation, is Gram-negative, rod-shaped, predominantly resides in the human gut, and is an obligate anaerobe. This bacterium thrives at moderate temperatures, ideally between 20°C and 45°C, which aligns with the human body temperature, making it well-suited for its ecological niche. As a chemoheterotroph, A. finegoldii relies on organic compounds from its environment for energy, engaging in fermentation processes to generate adenosine triphosphate (ATP). The Gram-negative nature of A. finegoldii is indicative of its cell wall structure, which contains a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This feature not only influences its pathogenic potential but also its interaction with the host immune system. The rod shape of the microbe aids in its motility within the dense microbial community of the gut, enabling effective colonization and nutrient acquisition. Predominantly found in the human gastrointestinal tract, A. finegoldii plays a pivotal role in maintaining gut health and homeostasis. Its obligate anaerobic lifestyle means it thrives in environments devoid of oxygen, which is characteristic of the human intestine, where it interacts with other gut microbiota to contribute to digestion and metabolic processes. Recent studies have indicated that A. finegoldii may be involved in the metabolism of certain dietary components, potentially influencing host metabolism and immune responses. Furthermore, its presence or absence has been linked to various health conditions, suggesting a role in maintaining the balance of the gut microbiome. Ongoing research into A. finegoldii may reveal more about its contributions to human health and disease, underscoring its importance in the field of microbiology and gut health research.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes finegoldii
StrainDSM 17242

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes finegoldii DSM 17242, complete sequence.

Gene Summary

Adenine Count

808396 bp

Thymine Count

810556 bp

Guanine Count

1057216 bp

Cytosine Count

1058071 bp

Genome Length

3734239 bp

Protein-coding Genes

3155 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide chain release factor n(5)-glutamine methyltransferaseALFI_RS00895Not AvailablePositive199419 - 20026130326.3
regulatory protein recxALFI_RS00900Not AvailablePositive200243 - 20076119911.9
m23 family metallopeptidaseALFI_RS00905Not AvailablePositive200746 - 20247363465.4
response regulatorALFI_RS00910Not AvailablePositive202530 - 20291314790.1
phage integrase sam-like domain-containing proteinALFI_RS00915Not AvailablePositive203427 - 20470449315.1
Trna-argNot AvailableNot AvailablePositive205370 - 205443Not Available
sh3 beta-barrel fold-containing proteinALFI_RS00925Not AvailablePositive206062 - 20642714474.2
hypothetical proteinALFI_RS00930Not AvailablePositive207482 - 20777211511.1
hypothetical proteinALFI_RS00940Not AvailablePositive207986 - 20825810325.3
single-stranded dna-binding proteinALFI_RS00945Not AvailablePositive208333 - 20866212115.4

Displaying genes 221 – 230 of 3241 in total

Metabolites

417 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 417 metabolites

Health Effects

No health effects information available for this bacterium.