Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5s ribosomal rna | Not Available | Not Available | Positive | 156 - 270 | Not Available |
| tetratricopeptide repeat protein | BXY66_0001 | Not Available | Positive | 202 - 1509 | 48640.8 |
| 23s ribosomal rna | Not Available | Not Available | Positive | 345 - 3173 | Not Available |
| hypothetical protein | BXY66_0002 | Not Available | Negative | 1513 - 2268 | 28143.1 |
| Trna-trp | Not Available | Not Available | Positive | 2363 - 2435 | Not Available |
| hypothetical protein | BXY66_0004 | Not Available | Negative | 2459 - 2722 | 9939.07 |
| cell division protein zape | BXY66_0005 | Not Available | Negative | 2864 - 3931 | 39989.2 |
| putative mfs family arabinose efflux permease | BXY66_0006 | Not Available | Positive | 4077 - 5309 | 43372.2 |
| s-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase | BXY66_0007 | Not Available | Negative | 5474 - 6613 | 40351.6 |
| peptidase inhibitor i78 family protein | BXY66_0008 | Not Available | Positive | 6775 - 7056 | 9939.83 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
