Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| surfeit locus 1 family protein | BXY66_0982 | Not Available | Positive | 974769 - 975476 | 26093.2 |
| l-threonine synthase | BXY66_0983 | Not Available | Positive | 975482 - 976870 | 50337.9 |
| putative zn-dependent peptidase | BXY66_0984 | Not Available | Positive | 976867 - 978129 | 45963.4 |
| ribosomal-protein-alanine n-acetyltransferase | BXY66_0985 | Not Available | Positive | 978129 - 978719 | 22452.0 |
| glutathione-dependent formaldehyde-activating enzyme | BXY66_0986 | Not Available | Positive | 978793 - 979194 | 15097.2 |
| l-ascorbate metabolism protein ulag (beta-lactamase superfamily) | BXY66_0987 | Not Available | Positive | 979244 - 980056 | 30101.3 |
| fad/fmn-containing dehydrogenase | BXY66_0988 | Not Available | Positive | 980090 - 981493 | 49413.4 |
| adenine phosphoribosyltransferase | BXY66_0989 | Not Available | Negative | 981515 - 982054 | 19567.9 |
| hypothetical protein | BXY66_0990 | Not Available | Positive | 982360 - 982587 | 8853.57 |
| threonine/homoserine/homoserine lactone efflux protein | BXY66_0991 | Not Available | Negative | 982597 - 983226 | 21898.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
