Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | DSM 26433 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacid coa-transferase subunit a | BXY66_0972 | Not Available | Negative | 964094 - 964813 | 25767.9 |
| l,d-transpeptidase-like protein | BXY66_0973 | Not Available | Negative | 964910 - 965602 | 25879.1 |
| dna topoisomerase i | BXY66_0974 | Not Available | Negative | 965616 - 968189 | 96244.5 |
| dna protecting protein dpra | BXY66_0975 | Not Available | Negative | 968335 - 969492 | 41137.1 |
| tldd protein | BXY66_0976 | Not Available | Negative | 969637 - 971058 | 49389.5 |
| cytochrome c oxidase subunit 2 | BXY66_0977 | Not Available | Positive | 971242 - 972090 | 31351.6 |
| protoheme ix farnesyltransferase | BXY66_0978 | Not Available | Positive | 972182 - 973120 | 33515.3 |
| hypothetical protein | BXY66_0979 | Not Available | Positive | 973122 - 973283 | 6126.49 |
| cytochrome c oxidase assembly protein subunit 11 | BXY66_0980 | Not Available | Positive | 973283 - 973858 | 21365.3 |
| cytochrome c oxidase subunit 3 | BXY66_0981 | Not Available | Positive | 973888 - 974688 | 30074.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
